How to Clean a Borehole [Easy! Do This]


We all know having a borehole is an alternative method to gaining access to underground water. And if you don’t, well now you do know. Boreholes are subjected to physical, biological and chemical processes depending on its construction quality, how it’s operated, characteristics and portability of the aquifer. Boreholes are also prone to various occurrences of both natural and man-made disasters.


Boreholes due to researches last a long while before developing any issues. But nevertheless the need to clean/ rehabilitate ones or public boreholes may arise due to the following reasons:

  1. First off, if the borehole has been in existence for over three (3) years.
  2. When relocated to a new home with a borehole, with no information on the water safety.
  3. Depreciation in the performance of the borehole yield. From a high yield of water supply to a drastically low yield.
  4. Noticeable Increase of iron content in water
  5. Occurrence of a natural disaster or man-made disaster in some cases e.g. Erosion, organic pollution, Flooding or Earthquakes.
  6. When the submersible pump gets faulty often with no vivid reason.

Borehole rehabilitation/ cleaning option to be chosen will depend greatly on the borehole condition, the nature of the damage, the technical and logistic options, and the user’s opinion (consumers and/or operators). The work required for rehabilitation can vary from a simple repair at the surface, to unclogging debris in the hole or renewing the borehole components.

Cleaning/Rehabilitation of Boreholes

The steps to be taken in order to clean/rehabilitate a borehole varies depending on the nature of clogging or reduced water yield. The following shows the traditional steps that could be necessitated or required for the rehabilitation of borehole.

  1. Assess the damage
  • Site visitation and obtaining available records of vital information. Information’s on the drilling diameter of the borehole, initial depth of the borehole, original yield in comparison to the current reduces yield and materials used for lining the borehole.
  • Possible contamination or pollution of groundwater is deduced. Septic tanks leaks in industrial installation and fractured sewers maybe the cause of contamination seeping into the ground.
  • Assessment of the type and extent of the damage to the uppermost part of the borehole. May include damage to pump’s connection to the riser pipe and borehole casing, the sanitary seal and bore apron.
  • Remove the pump and riser pipe from the borehole and check for possible damage or blockage
  • Check the borehole water level. If the water level is low, the riser pipe may be required to be extended.
  • Check the Borehole casing and screen for possible damage
  • A rough estimate of the amount of debris and silt in the bore
  • Disassemble the pump and the riser pipe to check for damage or worn parts
  • Estimate resources needed for rehabilitation (skilled personnel, equipment, time and materials).
  1. Borehole and hand pump repair
  • A high pressure industrial compressor should be used to flush sediments from the borehole
  • The top of the borehole casing should be checked for damage
  • Repair any damage to the pump and riser pipe. worn parts should also be replaced
  • Reassemble the pump with the riser pipe and reinstall all borehole components
  • Operate the pump to know if it’s working, the water product must be clear of shit and flow rate should be at it maximum.
  • Repair the clay sanitary seal and the drainage apron at the top and around the borehole respectively to prevent surface contamination of the groundwater.
  1. Disinfecting and Re-commission of borehole and hand pump
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Before re-commissioning the borehole is first disinfected by chemical cleaning. The process of chemical cleaning could take 1-3 days and the borehole needs to be dewatered after cleaning in order to remove the chemicals and it residue. Chlorination is the most utilized method of disinfecting to ensure a clean water supply.

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Post chlorination operate the pump for an hour or more to remove any groundwater contaminants caused by damage  or jetting process and the water to be tested until chlorine levels are back below 0.5 mg/liter.

Cleaning of Boreholes in Natural Disasters

In cases of natural disaster such as earthquake or flooding and regency approach is drained to rehabilitate boreholes in order for production of similar water quality to that supplied before the disaster. Five designed stages of approach are outlined below:

  • Assessment of damage
  • Rehabilitation of bore
  • Pump Test
  • Disinfection of borehole
  • De-watering borehole

What Causes Borehole Damages?

The problem associated with the dilapidation of borehole depends on it age, quality of construction, where it’s situated and operational use. Reduction in yield from a domesticated or commercial borehole can be due some potential causes. The possible causes may include as follows, but definitely not limited to them.

  • Mechanical clogging
  • Chemical encrustation
  • Biological clogging
  • Electrochemical and bacterial corrosion
  • Erosion

Clogging is a phenomenon that causes a reduction in the permeability of the water medium and increment in the head-losses at the intake level. The clogging of a borehole reduces its performance.

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Mechanical Clogging

Mechanical clogging occurs when soil particles or by-products of the borehole walls build up to form a clog and thereby reducing the water yield. Sand intrusion and silting up in a borehole is a significant entry of fine materials into the borehole which may extend upward and partially clogging intake section. This is caused by the poor installation of borehole components, like the screen slot not being centered adequately or over sized, uneven distribution of gravel and large gravel pack. Mechanical clogging may also be caused by the inappropriate operation of the borehole or wearing out of the screens or of other pipes.

Clogging of the gravel pack is caused by the accumulation of materials on the outside of the gravel pack or on the inside. This type of clogging is can be due to an insufficient borehole development, over-pumping, or a low-quality gravel pack  (inhomogeneous grain size, gravel that is too angular etc.).

Chemical Encrustation

This occurs when chemical deposits build up in the bore screen or gravel pack which ends up reducing water yield. Chemical encrustation is more like the chemical version of mechanical clogging. This consists of the precipitation of chemicals like that of insoluble salts that obstructs the slots of the screens. It is caused essentially by the dewatering of the screen.

Biological Clogging

Biological clogging occurs more often in alluvial or shallow layers and this is caused by the development of bacteria that creates a compact sticky film that obstructs the slots of the screen. This clogging may be due to natural occurrences (e.g. drought, flooding, or earthquake) or by man-made occurrence (organic pollution, raised water table, spillage, screen dewatering). Iron and manganese bacteria are often naturally present in the water and soils, but develops significantly due to changes brought about by the addition of nutrients in the borehole during pumping. Biological clogging mainly has a toll on the gravel pack and the screen.

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Electrochemical and Bacterial Corrosion

Corrosion is a chemical phenomenon that tends to destroy a material in a medium. Metallic pipes are unstable in water and will corrode because of migration of positive ions from the metal into the water. Certain chemical reactions are frequently catalyzed by bacterial activity. In boreholes, the metallic and non-metallic parts are vulnerable to corrosion which is the other case for the plastics, the bituminous facing, and the stainless steel parts.